Installation

Welcome to installation protocol of Brooklyn

Requirements for brooklyn_plot package are python3.8 and R (ggplot2)

This installation protocol is based on Ubuntu, please use the commands that suit your Linux distribution. For example, apt should be replaced with yum in Fedora/CentOS.

Search and start the terminal
Follow the commands to update Ubuntu and install python 3.8
A password will be prompted when you type sudo, use the one you have set during Ubuntu (or your distro) installation.

sudo apt update
sudo apt install software-properties-common
sudo add-apt-repository ppa:deadsnakes/ppa
sudo apt install python3.8
sudo apt install python3-setuptools
sudo apt install python3-pip
sudo apt install r-base

Please seek IT administrators help if you have difficulty in installing Python and R

Installing brooklyn_plot with conda

conda install -c bioconda brooklyn_plot

If you want to use your own environment, please follow the instruction here.

Updating brooklyn_plot with conda

conda update brooklyn_plot 

Installing brooklyn_plot with PyPi

Install brooklyn_plot by this simple command

python3.8 -m pip install --user brooklyn_plot 

To upgrade brooklyn_plot

python3.8 -m pip install --user --upgrade brooklyn_plot 